SMTL ID : 6k9y.2 (1 other biounit)

Crystal structure of human VAT-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 9 residues within 4Å: Chain A: L.52, N.53, N.136, G.164, V.165, M.338, N.343, G.345, K.346 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.136, A:G.164, A:V.165, A:N.343, A:G.345 Water bridges: A:N.53, A:F.54 NO3.2: 4 residues within 4Å: Chain A: A.185, S.186, K.189, H.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.186, A:S.186 Water bridges: A:T.184 NO3.3: 8 residues within 4Å: Chain B: L.52, N.53, N.136, G.164, V.165, N.343, G.345, K.346 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.53, B:N.136, B:G.164, B:V.165, B:N.343, B:G.345 NO3.4: 6 residues within 4Å: Chain B: F.54, A.55, M.58, G.250, M.251, H.291 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.251 Water bridges: B:F.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, Y. et al., Structural basis for interorganelle phospholipid transport mediated by VAT-1. J.Biol.Chem. (2020)

Release Date

2020-02-12

Peptides

Synaptic vesicle membrane protein VAT-1 homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Synaptic vesicle membrane protein VAT-1 homolog

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