SMTL ID : 6kan.1

Crystal structure of FKRP in complex with Ba ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.249, C.256, P.275, C.277, C.278 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.249, A:C.256, A:C.277, A:C.278 ZN.5: 4 residues within 4Å: Chain B: C.249, C.256, C.277, C.278 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.249, B:C.256, B:C.277, B:C.278 ZN.9: 4 residues within 4Å: Chain C: C.249, C.256, C.277, C.278 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.249, C:C.256, C:C.277, C:C.278 ZN.13: 4 residues within 4Å: Chain D: C.249, C.256, C.277, C.278 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.249, D:C.256, D:C.277, D:C.278

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.132, R.141, Y.142, G.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.132 NAG.3: 7 residues within 4Å: Chain A: R.165, N.169 Chain B: P.71 Chain C: L.451 Chain D: L.53, P.54, R.55 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:R.165, D:L.53, D:R.55 Water bridges: A:R.114, A:N.169, A:N.169, A:R.189 NAG.6: 4 residues within 4Å: Chain B: N.132, R.141, Y.142, E.240 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.132 NAG.10: 5 residues within 4Å: Chain A: F.433 Chain C: N.132, R.141, Y.142, G.143 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.132 NAG.11: 7 residues within 4Å: Chain A: L.451 Chain B: L.53, P.54, R.55 Chain C: R.165, N.169 Chain D: P.71 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Water bridges: C:N.169, C:R.189 Hydrogen bonds: B:L.53, B:R.55 NAG.14: 4 residues within 4Å: Chain D: N.132, R.141, Y.142, G.143 No protein-ligand interaction detected (PLIP) NAG.15: 5 residues within 4Å: Chain D: E.78, A.164, R.165, F.168, N.169 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.169

5 x BA: BARIUM ION(Non-functional Binders)(Non-covalent)

BA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) BA.7: 4 residues within 4Å: Chain B: D.320, D.322, D.324 Ligands: BA.8 No protein-ligand interaction detected (PLIP) BA.8: 3 residues within 4Å: Chain B: D.322, D.324 Ligands: BA.7 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.322 BA.12: 1 residues within 4Å: Chain C: D.324 No protein-ligand interaction detected (PLIP) BA.16: 2 residues within 4Å: Chain D: D.322, D.324 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun (2020)

Release Date

2020-01-15

Peptides

Fukutin-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fukutin-related protein

Related Entries With Identical Sequence