SMTL ID : 6l7u.1

Crystal structure of FKRP in complex with Ba ion, Ba-SAD data

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.249, C.256, P.275, C.277, C.278 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.249, A:C.256, A:C.277, A:C.278 ZN.4: 4 residues within 4Å: Chain B: C.249, C.256, C.277, C.278 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.249, B:C.256, B:C.277, B:C.278 ZN.7: 5 residues within 4Å: Chain C: C.249, C.256, P.275, C.277, C.278 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.249, C:C.256, C:C.277, C:C.278 ZN.10: 4 residues within 4Å: Chain D: C.249, C.256, C.277, C.278 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.249, D:C.256, D:C.277, D:C.278

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.132, R.141, Y.142, G.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.132 NAG.5: 3 residues within 4Å: Chain B: N.132, R.141, Y.142 No protein-ligand interaction detected (PLIP) NAG.8: 7 residues within 4Å: Chain A: L.451 Chain B: L.53, P.54, R.55 Chain C: R.165, N.169 Chain D: P.71 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:L.53, B:R.55 Hydrophobic interactions: C:R.165 Water bridges: C:R.114, C:R.189 NAG.11: 3 residues within 4Å: Chain D: N.132, R.141, Y.142 No protein-ligand interaction detected (PLIP) NAG.12: 4 residues within 4Å: Chain D: E.78, R.165, F.168, N.169 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.169

4 x BA: BARIUM ION(Non-functional Binders)(Non-covalent)

BA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) BA.6: 2 residues within 4Å: Chain B: D.322, D.324 No protein-ligand interaction detected (PLIP) BA.9: 1 residues within 4Å: Chain C: D.324 No protein-ligand interaction detected (PLIP) BA.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun (2020)

Release Date

2020-01-15

Peptides

Fukutin-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fukutin-related protein

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