SMTL ID : 6kdq.1 (1 other biounit)

Crystal structure of human NRMT1 in complex with alpha-N-monomethylated human CENP-A peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SAR- PRO- ARG- ARG- ARG- SER: CENP-A peptide(Non-covalent)

SAR-PRO-ARG-ARG-ARG-SER.1: 15 residues within 4Å: Chain A: Y.39, W.40, M.50, L.51, G.52, Y.54, W.156, N.188, D.197, D.200, D.232, E.233, I.234, Y.235 Ligands: SAH.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.54, A:Y.54, A:W.156, A:I.234, A:Y.235, A:Y.235 Hydrogen bonds: A:Y.39, A:Y.39, A:Y.39, A:M.50, A:N.188, A:D.232, A:D.232, A:E.233, A:Y.235, A:Y.235 Water bridges: A:G.52, A:N.188, A:I.234 Salt bridges: A:D.197, A:D.200

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 21 residues within 4Å: Chain A: W.40, M.50, G.89, A.90, G.91, R.94, I.95, D.111, I.112, T.113, F.116, C.137, G.138, L.139, Q.140, Q.155, W.156, V.157, H.160, L.161 Ligands: SAR-PRO-ARG-ARG-ARG-SER.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.89, A:I.112, A:T.113, A:T.113, A:L.139, A:Q.140 Water bridges: A:Q.155 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., Substrate engagement regulates state-specific alpha-N methylation of CENP-A by NRMT2. to be published

Release Date

2020-07-08

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-terminal Xaa-Pro-Lys N-methyltransferase 1

Related Entries With Identical Sequence