SMTL ID : 6kfy.1

SufS from Bacillus subtilis in a resting state at 1.96 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: H.56, R.57, E.255, K.268, W.272 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.268 PGE.8: 5 residues within 4Å: Chain B: H.56, R.57, E.255, K.268, W.272 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.268

10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: Y.106, G.195, A.196, L.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.192 PEG.3: 5 residues within 4Å: Chain A: D.8, Q.12, F.293, E.296, I.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.12 Water bridges: A:E.296, A:E.296 PEG.4: 5 residues within 4Å: Chain A: T.7, R.10, T.387, E.389, E.390 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.387, A:E.389, A:E.389 Water bridges: A:R.10 PEG.5: 4 residues within 4Å: Chain A: N.49, Q.50 Chain B: P.14, Q.18 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.18, A:Q.50 Water bridges: A:N.49 PEG.6: 5 residues within 4Å: Chain A: V.350, E.354, K.400, T.401, Y.404 No protein-ligand interaction detected (PLIP) PEG.9: 4 residues within 4Å: Chain B: Y.106, G.195, A.196, L.243 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.106, B:H.192 PEG.10: 5 residues within 4Å: Chain B: D.8, Q.12, F.293, E.296, I.297 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.12 Water bridges: B:E.296, B:E.296 PEG.11: 5 residues within 4Å: Chain B: T.7, R.10, T.387, E.389, E.390 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.7, B:E.389 Water bridges: B:R.10 PEG.12: 4 residues within 4Å: Chain A: P.14, Q.18 Chain B: N.49, Q.50 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.50, A:Q.18 Water bridges: B:N.49 PEG.13: 5 residues within 4Å: Chain B: V.350, E.354, K.400, T.401, Y.404 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 7 residues within 4Å: Chain A: R.359, A.360, G.361, H.362, H.363, C.364 Chain B: R.57 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.360, A:H.362, A:H.363, A:C.364 Salt bridges: A:R.359, A:H.362, B:R.57 SO4.14: 7 residues within 4Å: Chain A: R.57 Chain B: R.359, A.360, G.361, H.362, H.363, C.364 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.360, B:H.362, B:H.363, B:C.364 Salt bridges: B:R.359, B:H.362, A:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, R. et al., Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms. Febs J. (2022)

Release Date

2020-07-15

Peptides

Cysteine desulfurase SufS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cysteine desulfurase SufS

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