SMTL ID : 6kgv.1

Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with amoxicillin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 1 residues within 4Å: Chain A: H.535 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.535, H2O.2, H2O.3, H2O.6, H2O.7 CO.2: 1 residues within 4Å: Chain A: H.185 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.185, H2O.4 CO.3: 2 residues within 4Å: Chain A: H.305, E.309 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.305, A:E.309, A:E.309, H2O.6 CO.4: 1 residues within 4Å: Chain A: H.528 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.528, H2O.3, H2O.7

1 x AXL: 2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID(Covalent)

AXL.5: 12 residues within 4Å: Chain A: G.268, S.269, K.272, A.307, S.324, N.326, K.475, T.476, G.477, T.478, Q.480, Y.494 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.478, A:Y.494 Hydrogen bonds: A:S.269, A:S.324, A:S.324, A:S.324, A:N.326, A:T.461, A:T.476, A:T.478, A:T.478 Salt bridges: A:K.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Z. et al., Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation. Mol.Pharmacol. (2020)

Release Date

2020-03-11

Peptides

Penicillin-binding protein PbpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein PbpB

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