SMTL ID : 6khk.1

Lipase (Closed form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.142, N.231, Y.236, V.264, R.267 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.142, A:N.231, A:Y.236, A:R.267, A:R.267 Water bridges: A:R.121 GOL.2: 9 residues within 4Å: Chain A: G.37, L.38, S.114, W.115, V.140, F.179, W.192, H.285 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.38, A:S.114, A:W.115, A:H.285 GOL.3: 8 residues within 4Å: Chain A: P.143, R.144, G.178, F.179, D.181, P.253, D.256, F.257 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.144, A:R.144, A:P.253 Water bridges: A:D.181, A:D.181 GOL.4: 11 residues within 4Å: Chain A: L.38, G.39, E.40, R.44, H.113, S.114, H.203, F.211, H.285, E.286 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.38, A:S.114, A:S.114, A:H.203, A:E.286, A:E.286 GOL.5: 6 residues within 4Å: Chain A: N.83, A.84, A.85, E.86, D.225, M.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.83, A:A.85, A:E.86 Water bridges: A:A.84 GOL.6: 4 residues within 4Å: Chain A: E.147, N.231, G.232 Ligands: GOL.1 No protein-ligand interaction detected (PLIP) GOL.7: 10 residues within 4Å: Chain B: L.38, G.39, E.40, H.113, S.114, H.203, F.211, H.285, E.286 Ligands: GOL.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.38, B:S.114, B:S.114, B:H.203, B:H.285 GOL.8: 7 residues within 4Å: Chain B: L.38, S.114, V.140, F.176, F.179, A.254 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.114 GOL.9: 8 residues within 4Å: Chain B: L.38, G.39, F.176, N.210, F.211, G.212, A.213, M.215 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.212, B:A.213 Water bridges: B:N.209, B:N.210, B:A.213, B:M.215 GOL.10: 8 residues within 4Å: Chain B: P.143, R.144, D.177, G.178, F.179, P.253, D.256, F.257 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.144, B:R.144, B:D.177, B:D.256, B:D.256 Water bridges: B:D.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.J. et al., Closed, blocked, and open states of lysophospholipase from type II Cutibacterium acnes. To Be Published

Release Date

2020-07-22

Peptides

Hydrolase, alpha/beta domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydrolase, alpha/beta domain protein

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