SMTL ID : 6kih.12 (11 other biounits)

Sucrose-phosphate synthase (tll1590) from Thermosynechococcus elongatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x GLC- F6P: 6-O-phosphono-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-F6P.1: 20 residues within 4Å: Chain A: H.39, G.52, G.53, Q.54, R.108, Y.138, H.161, S.162, K.167, R.181, T.198, C.221, R.256, Y.333, E.334, P.335, F.336, G.337, L.338 Ligands: UDP.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.53, A:Q.54, A:Y.138, A:S.162, A:H.161, A:T.198, A:T.198, A:F.336, A:L.338 Salt bridges: A:R.108, A:K.167, A:R.181, A:R.256

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 22 residues within 4Å: Chain A: V.46, G.47, G.52, G.53, I.56, V.250, R.252, R.256, K.257, V.277, G.278, Q.311, I.312, H.314, L.317, E.334, G.337, L.338, V.339, E.342 Ligands: GLC-F6P.1, GLC-F6P.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.53, A:R.256, A:I.312, A:I.312, A:L.338, A:V.339, A:E.342 Salt bridges: A:R.252, A:K.257, A:K.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Co-crystal Structure ofThermosynechococcus elongatusSucrose Phosphate Synthase With UDP and Sucrose-6-Phosphate Provides Insight Into Its Mechanism of Action Involving an Oxocarbenium Ion and the Glycosidic Bond. Front Microbiol (2020)

Release Date

2020-05-27

Peptides

Tll1590 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

Tll1590 protein

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