SMTL ID : 6kih.5 (11 other biounits)

Sucrose-phosphate synthase (tll1590) from Thermosynechococcus elongatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x GLC- F6P: 6-O-phosphono-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-F6P.1: 19 residues within 4Å: Chain A: H.39, G.52, G.53, Q.54, N.55, R.108, Y.138, H.161, S.162, K.167, R.181, C.221, R.252, R.256, Y.333, E.334, P.335, F.336 Ligands: UDP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.52, A:G.53, A:Q.54, A:S.162, A:S.162, A:Y.333, A:H.161, A:E.334, A:F.336, A:L.338 Salt bridges: A:R.108, A:K.167, A:R.181

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 19 residues within 4Å: Chain A: V.46, G.47, G.52, G.53, V.250, R.252, R.256, K.257, V.277, I.312, H.314, L.317, E.334, G.337, L.338, V.339, E.342 Ligands: GLC-F6P.1, GLC-F6P.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.250 Hydrogen bonds: A:G.53, A:I.312, A:I.312, A:E.334, A:L.338, A:V.339, A:E.342 Salt bridges: A:R.252, A:K.257, A:K.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Co-crystal Structure ofThermosynechococcus elongatusSucrose Phosphate Synthase With UDP and Sucrose-6-Phosphate Provides Insight Into Its Mechanism of Action Involving an Oxocarbenium Ion and the Glycosidic Bond. Front Microbiol (2020)

Release Date

2020-05-27

Peptides

Tll1590 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Tll1590 protein

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