SMTL ID : 6kk5.1

Crystal structure of Zika NS2B-NS3 protease with compound 15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DE6: 1-[(5~{S},8~{R},15~{S},18~{S})-15,18-bis(4-azanylbutyl)-5-methyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine(Non-covalent)

DE6.1: 16 residues within 4Å: Chain A: G.39, D.40, F.41, S.42 Chain B: H.52, D.130, Y.131, A.133, S.136, G.152, N.153, G.154, V.156, G.160, S.161, Y.162 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.156, B:Y.162, B:Y.162 Hydrogen bonds: B:S.136, B:G.154, B:G.160, B:Y.162, A:D.40, A:F.41 Salt bridges: B:D.130 Water bridges: A:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braun, N.J. et al., Structure-Based Macrocyclization of Substrate Analogue NS2B-NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses. Chemmedchem (2020)

Release Date

2020-06-17

Peptides

Serine protease subunit NS2B: A
NS3 protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

NS3 protease

Related Entries With Identical Sequence