SMTL ID : 6km7.2 (1 other biounit)

The structural basis for the internal interaction in RBBP5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.57, I.58, I.81, R.95 Chain B: K.40 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.58 Water bridges: A:A.56, A:H.59, A:D.79, B:K.40 Salt bridges: A:H.57, A:R.95, B:K.40 SO4.2: 2 residues within 4Å: Chain A: R.26, R.68 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.26, A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.110, R.153, R.154 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.153, A:R.153 Salt bridges: A:R.110, A:R.153, A:R.154 SO4.4: 4 residues within 4Å: Chain A: R.26, R.68, R.110, R.153 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.26 Water bridges: A:R.68, A:R.68, A:R.200 Salt bridges: A:R.68, A:R.110, A:R.153, A:K.201 SO4.5: 5 residues within 4Å: Chain A: T.184, R.215, E.232, P.233, K.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.184, A:E.232 Salt bridges: A:R.215, A:K.236 SO4.6: 3 residues within 4Å: Chain A: K.166, R.182, D.228 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.166, A:D.228 Salt bridges: A:K.166, A:R.182

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.7: 7 residues within 4Å: Chain A: P.138, V.139, D.140, D.141, D.142, S.143, L.177 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.139, A:L.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, J. et al., The internal interaction in RBBP5 regulates assembly and activity of MLL1 methyltransferase complex. Nucleic Acids Res. (2019)

Release Date

2019-10-02

Peptides

Retinoblastoma-binding protein 5: A
Retinoblastoma-binding protein 5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Retinoblastoma-binding protein 5

Retinoblastoma-binding protein 5

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