SMTL ID : 6kpl.1

Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 3 residues within 4Å: Chain A: P.111, A.112, Q.115 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: Y.187, S.214, Y.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.187 PEG.3: 3 residues within 4Å: Chain A: S.191, Y.192, K.219 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.192 PEG.4: 4 residues within 4Å: Chain A: W.75, R.95, T.124, Y.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.95, A:R.95, A:Y.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seki, H. et al., Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris. J.Biol.Chem. (2019)

Release Date

2019-10-02

Peptides

Chitinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase

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