SMTL ID : 6kpm.1

Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.1: 6 residues within 4Å: Chain A: N.175, Q.196, S.197, Y.198, R.200, W.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.175, A:Y.198, A:Y.198, A:R.200, A:R.200

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 3 residues within 4Å: Chain A: P.111, A.112, Q.115 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: Y.187, S.214, Y.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.187 PEG.4: 4 residues within 4Å: Chain A: L.169, S.191, Y.192, K.219 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seki, H. et al., Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris. J.Biol.Chem. (2019)

Release Date

2019-10-02

Peptides

Chitinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase

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