SMTL ID : 6kpq.1

Crystal structure of Zika NS2B-NS3 protease with compound 8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DT0: 1-[(10~{R},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.3.1]octacosa-1(27),24(28),25-trien-10-yl]guanidine(Non-covalent)

DT0.1: 17 residues within 4Å: Chain A: G.39, D.40, F.41 Chain B: H.52, D.76, D.130, Y.131, A.133, S.136, Y.151, G.152, N.153, G.154, V.156, G.160, S.161, Y.162 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.151, B:Y.162, B:Y.162 Hydrogen bonds: B:S.136, B:N.153, B:G.154, B:G.160, B:Y.162, A:F.41 Salt bridges: B:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braun, N.J. et al., Structure-Based Macrocyclization of Substrate Analogue NS2B-NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses. Chemmedchem (2020)

Release Date

2020-06-17

Peptides

Serine protease subunit NS2B: A
NS3 protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

NS3 protease

Related Entries With Identical Sequence