SMTL ID : 6kqy.1

Crystal structure of human leucyl-tRNA synthetase, Leucine-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

2 x LEU: LEUCINE(Non-covalent)

LEU.1: 10 residues within 4Å: Chain A: P.63, Y.64, P.65, Y.66, H.75, H.103, H.263, L.606, L.689, H.693 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:Y.64, A:L.606, A:L.689 Hydrogen bonds: A:Y.66, A:Y.66, A:H.263 Salt bridges: A:H.75 LEU.2: 8 residues within 4Å: Chain A: A.304, T.305, L.306, R.307, K.396, T.402, S.408, K.476 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.306 Hydrogen bonds: A:L.306, A:R.307, A:R.307, A:S.408 Salt bridges: A:R.307, A:K.476

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 1 residues within 4Å: Chain A: N.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.68 Water bridges: A:Q.266, A:Q.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation. Cell Rep (2021)

Release Date

2021-01-27

Peptides

Leucine--tRNA ligase, cytoplasmic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase, cytoplasmic

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