SMTL ID : 6kr7.1

Crystal structure of methylated human leucyl-tRNA synthetase, Leu-AMS-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

monomer

Ligands

1 x LEU: LEUCINE(Non-covalent)

LEU.1: 7 residues within 4Å: Chain A: T.305, L.306, R.307, V.401, T.402, S.408, D.411 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.306, A:L.306 Hydrogen bonds: A:S.408

1 x LSS: 5'-O-(L-leucylsulfamoyl)adenosine(Non-covalent)

LSS.2: 22 residues within 4Å: Chain A: F.62, P.63, Y.64, P.65, Y.66, H.72, G.74, H.75, S.78, H.103, H.263, S.609, Y.612, R.683, S.685, G.686, D.688, L.689, H.693, G.720, H.721, L.722 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.64, A:Y.612, A:L.689 Hydrogen bonds: A:Y.64, A:Y.66, A:H.75, A:S.78, A:H.103, A:S.685, A:G.686, A:L.722 Salt bridges: A:H.75 pi-Stacking: A:H.721

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 2 residues within 4Å: Chain A: N.68, R.529 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.68, A:N.68 Salt bridges: A:R.529

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation. Cell Rep (2021)

Release Date

2021-01-27

Peptides

Leucine--tRNA ligase, cytoplasmic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase, cytoplasmic

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