SMTL ID : 6kum.2 (1 other biounit)

Ferredoxin I from C. reinhardtii, low X-ray dose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 10 residues within 4Å: Chain A: Y.36, S.37, C.38, R.39, G.41, A.42, C.43, C.46, L.74, C.76 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.38, A:C.43, A:C.46, A:C.76

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 4 residues within 4Å: Chain A: F.62, Q.67, L.94, Y.95 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.62, A:F.62 pi-Stacking: A:Y.95

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 2 residues within 4Å: Chain A: A.1 Ligands: NA.6 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.3, T.5, C.84 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: A.19, Y.79, P.80, T.81 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: A.1, Y.2, K.3, E.16 Ligands: SCN.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.16 Water bridges: A:K.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohnishi, Y. et al., X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii. J.Biochem. (2020)

Release Date

2020-05-20

Peptides

Ferredoxin, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ferredoxin, chloroplastic

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