SMTL ID : 6kx6.1

Crystal structure of mouse Cryptochrome 1 in complex with KL101 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x DYU: ~{N}-[2-(2,4-dimethylphenyl)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]-3,4-dimethyl-benzamide(Non-covalent)

DYU.1: 16 residues within 4Å: Chain A: W.294, F.298, H.357, R.360, H.361, A.364, F.383, D.389, A.390, I.394, N.395, S.398, W.399, W.401, L.402 Chain B: D.205 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.294, A:W.294, A:W.294, A:W.294, A:R.360, A:A.364, A:F.383, A:F.383, A:I.394, A:W.399, A:W.401, A:W.401, A:L.402, B:D.205 Hydrogen bonds: A:R.360, A:S.398, A:S.398 pi-Stacking: A:F.298 pi-Cation interactions: A:H.357 DYU.2: 14 residues within 4Å: Chain B: W.294, F.298, H.357, R.360, A.364, F.383, D.389, A.390, I.394, N.395, S.398, W.399, W.401, L.402 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:W.294, B:W.294, B:W.294, B:R.360, B:A.364, B:F.383, B:F.383, B:I.394, B:W.399, B:W.401, B:W.401, B:L.402 Hydrogen bonds: B:R.360, B:S.398, B:S.398 pi-Stacking: B:F.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S. et al., Isoform-selective regulation of mammalian cryptochromes. Nat.Chem.Biol. (2020)

Release Date

2020-04-01

Peptides

Cryptochrome-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cryptochrome-1

Related Entries With Identical Sequence