SMTL ID : 6l1p.3 (3 other biounits)

Crystal structure of PHF20L1 in complex with Hit 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x E3X: 4-(1-methyl-3,6-dihydro-2H-pyridin-4-yl)phenol(Non-covalent)

E3X.1: 7 residues within 4Å: Chain A: D.23, Y.24, L.25, Y.29, F.47, W.50, Y.54 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.25, A:W.50, A:Y.54 Salt bridges: A:D.23 pi-Cation interactions: A:W.50, A:W.50

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.51, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.51 Salt bridges: A:R.53 SO4.3: 5 residues within 4Å: Chain A: R.32, H.46, E.48, R.49, W.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49 Salt bridges: A:R.32, A:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lv, M. et al., Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1. J Phys Chem Lett (2020)

Release Date

2020-09-23

Peptides

PHD finger protein 20-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

PHD finger protein 20-like protein 1

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