SMTL ID : 6l96.1

Structure of PPARalpha-LBD/pemafibrate/SRC1 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-1-mer

Ligands

2 x P7F: (2~{R})-2-[3-[[1,3-benzoxazol-2-yl-[3-(4-methoxyphenoxy)propyl]amino]methyl]phenoxy]butanoic acid(Non-covalent)

P7F.1: 19 residues within 4Å: Chain A: V.62, I.79, F.80, C.82, C.83, Q.84, T.86, S.87, Y.121, I.124, F.125, M.127, L.128, V.131, V.139, I.146, M.162, H.247, Y.271 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.79, A:F.80, A:Q.84, A:T.86, A:I.124, A:F.125, A:L.128, A:L.128, A:V.131, A:I.146 Hydrogen bonds: A:S.87, A:S.87, A:Y.271 Salt bridges: A:H.247 P7F.2: 20 residues within 4Å: Chain B: L.54, F.80, C.82, C.83, Q.84, T.86, S.87, Y.121, I.124, F.125, M.127, L.128, V.131, M.137, V.139, M.162, H.247, V.251, L.267, Y.271 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.80, B:Q.84, B:F.125, B:M.127, B:L.128, B:V.131, B:V.131, B:V.139, B:V.139, B:V.251 Hydrogen bonds: B:S.87 Salt bridges: B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawasaki, M. et al., Elucidation of Molecular Mechanism of a Selective PPAR alpha Modulator, Pemafibrate, through Combinational Approaches of X-ray Crystallography, Thermodynamic Analysis, and First-Principle Calculations. Int J Mol Sci (2020)

Release Date

2020-01-15

Peptides

Peroxisome proliferator-activated receptor alpha: AB
SRC1 coactivator peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Peroxisome proliferator-activated receptor alpha

SRC1 coactivator peptide

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