SMTL ID : 6ld1.1

Zika NS5 polymerase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Q.106, N.208, M.209, M.210, K.334, V.335, L.336, M.346 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.106, A:M.209, A:K.334, A:L.336 EDO.2: 5 residues within 4Å: Chain A: S.466, H.467, H.468, R.485, H.486 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.486 EDO.3: 1 residues within 4Å: Chain A: R.435 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.435, A:R.435

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: E.193, H.197, C.202, C.205 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.193, A:H.197, A:C.202, A:C.205 ZN.5: 3 residues within 4Å: Chain A: H.468, C.484, C.603 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.468, A:C.484, A:C.603, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gharbi-Ayachi, A. et al., Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol. (2020)

Release Date

2020-08-12

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase NS5

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