SMTL ID : 6ld2.1

Zika NS5 polymerase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.193, H.197, C.202, C.205 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.193, A:H.197, A:C.202, A:C.205 ZN.2: 3 residues within 4Å: Chain A: H.468, C.484, C.603 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.468, A:C.484, A:C.603

1 x KY3: (1S,2S,4S,5R)-2,4-dimethoxy-5-thiophen-2-yl-cyclohexane-1-carboxylic acid(Non-covalent)

KY3.3: 14 residues within 4Å: Chain A: L.267, C.465, S.466, H.467, R.485, R.493, M.517, L.521, Y.522, T.550, S.552, H.554, G.555, W.559 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.267, A:L.521, A:T.550, A:W.559 Hydrogen bonds: A:S.466, A:R.485, A:T.550, A:S.552 Water bridges: A:R.485, A:R.485, A:R.485, A:R.485, A:R.493, A:R.493 Salt bridges: A:R.485, A:R.493

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gharbi-Ayachi, A. et al., Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol. (2020)

Release Date

2020-08-12

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase NS5

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