SMTL ID : 6ldv.1

Structure antibody F9 in complex with methylated peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.9, L.10 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: S.30 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: G.145, Q.172 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: P.199, N.202, K.204 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: S.121 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain B: A.14 Ligand excluded by PLIP IOD.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain B: K.111 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishii, M. et al., Structural basis for antigen recognition by methylated lysine-specific antibodies. J.Biol.Chem. (2020)

Release Date

2020-11-25

Peptides

Fab heavy chain: A
Fab light chain: B
GLY-M3L-GLY-GLY-THR-TYR-PRO: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

Fab heavy chain

Fab light chain

GLY-M3L-GLY-GLY-THR-TYR-PRO

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