SMTL ID : 6ls6.2 (1 other biounit)

Crystal Structure of YEATS domain of AF9 in complex with H3K9bz peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x THR- LYS- GLN- THR- ALA- ARG- LBZ- SER: 2(Non-covalent)

THR-LYS-GLN-THR-ALA-ARG-LBZ-SER.1: 18 residues within 4Å: Chain A: F.31, H.33, H.59, S.61, F.62, S.79, G.80, Y.81, A.82, G.83, F.84, I.85, D.106, F.108, L.109, H.110, L.111, H.114 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.31, A:F.31, A:F.62, A:F.62, A:Y.81, A:A.82, A:F.84, A:L.109, A:L.111 Hydrogen bonds: A:S.61, A:S.61, A:Y.81, A:A.82, A:G.83, A:G.83, A:F.84, A:L.109, A:L.111 Water bridges: A:L.109, A:L.109 Salt bridges: A:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, X. et al., Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins. Nucleic Acids Res. (2021)

Release Date

2020-11-18

Peptides

Protein AF-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein AF-9

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