SMTL ID : 6lur.1

Human PUF60 UHM domain (thioredoxin fusion) in complex with a small molecule binder

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x EVU: 4-[2-[4-(aminomethyl)phenyl]phenyl]piperazin-2-one(Non-covalent)

EVU.1: 9 residues within 4Å: Chain B: L.129, M.132, L.142, E.145, V.146, E.149, C.150, L.195, F.200 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.129, B:L.142, B:E.145, B:V.146, B:E.149, B:L.195 Hydrogen bonds: B:E.145 EVU.2: 6 residues within 4Å: Chain B: K.165, E.170, I.174 Chain C: L.27, K.28, G.94 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:L.27, C:L.27, C:K.28, B:K.165, B:K.165, B:I.174 Water bridges: C:K.28, C:K.28, C:K.28 Hydrogen bonds: B:E.170 EVU.3: 6 residues within 4Å: Chain B: A.115, G.119, S.120, A.121 Chain F: M.47, A.103 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: B:A.115, B:A.121, F:A.103 Water bridges: B:N.116 EVU.4: 9 residues within 4Å: Chain C: L.129, M.132, L.142, E.145, V.146, E.149, C.150, L.195, F.200 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.129, C:L.142, C:E.145, C:V.146, C:E.149, C:L.195 EVU.5: 6 residues within 4Å: Chain A: M.47, A.103 Chain C: A.115, G.119, S.120, A.121 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:A.115, C:A.121, A:A.103 EVU.6: 8 residues within 4Å: Chain D: L.129, M.132, L.142, E.145, E.149, C.150, L.195, F.200 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.129, D:L.142, D:E.149, D:L.195 EVU.7: 8 residues within 4Å: Chain A: Q.163, K.165, I.174 Chain D: D.23, L.27, K.28, N.93, G.94 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: D:L.27, A:Q.163, A:K.165, A:I.174 Hydrogen bonds: D:D.23, A:K.165 EVU.8: 9 residues within 4Å: Chain E: L.129, M.132, L.142, E.145, V.146, E.149, C.150, L.195, F.200 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:L.129, E:L.142, E:E.145, E:V.146, E:V.146, E:E.149, E:L.195, E:L.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanzawa, H. et al., Revisiting biomolecular NMR spectroscopy for promoting small-molecule drug discovery. J.Biomol.Nmr (2020)

Release Date

2020-04-29

Peptides

Thioredoxin 1,Poly(U)-binding-splicing factor PUF60: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Thioredoxin 1,Poly(U)-binding-splicing factor PUF60

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