SMTL ID : 6lzx.1

Structure of Phytolacca americana UGT3 with 15-crown-5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

1 x EYO: 1,4,7,10,13-pentaoxacyclopentadecane(Non-covalent)

EYO.1: 11 residues within 4Å: Chain A: L.180, Y.181, K.257, E.258, L.259 Chain B: Y.181, K.257, E.258, L.259, G.260 Ligands: NA.2 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.258, L.259 Chain B: E.258 Ligands: EYO.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.258

4 x BR: BROMIDE ION(Non-covalent)

BR.3: 2 residues within 4Å: Chain A: K.420, N.423 Ligand excluded by PLIP BR.4: 4 residues within 4Å: Chain A: E.248, P.249, N.250, Y.251 Ligand excluded by PLIP BR.5: 2 residues within 4Å: Chain B: E.419, N.423 Ligand excluded by PLIP BR.6: 4 residues within 4Å: Chain B: E.248, P.249, N.250, Y.251 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain B: L.175, A.413 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maharjan, R. et al., Crown-ether-mediated crystal structures of the glycosyltransferase PaGT3 from Phytolacca americana. Acta Crystallogr D Struct Biol (2020)

Release Date

2020-06-10

Peptides

Glycosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase

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