SMTL ID : 7vej.1 (1 other biounit)

Crystal structure of Phytolacca americana UGT3 with kaempferol and UDP-2fluoroglucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: L.175, V.178, L.210, P.211, A.413, Y.417, W.437 Ligands: KMP.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.413

1 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.2: 8 residues within 4Å: Chain A: L.180, Y.181, L.198, K.257, E.258, L.259, G.260 Ligands: K.3 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-covalent)

K.3: 2 residues within 4Å: Chain A: E.258 Ligands: O4B.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.258

1 x U2F: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE(Non-covalent)

U2F.4: 23 residues within 4Å: Chain A: G.39, H.40, H.165, G.166, C.309, G.311, S.312, T.313, V.338, W.372, A.373, Q.375, H.390, G.392, W.393, N.394, S.395, E.398, F.412, A.413, E.414, Q.415 Ligands: KMP.5 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.39, A:H.165, A:S.312, A:T.313, A:A.373, A:A.373, A:Q.375, A:Q.375, A:G.392, A:W.393, A:N.394, A:N.394, A:S.395, A:E.414, A:Q.415 Water bridges: A:G.311, A:S.312, A:S.312, A:V.376 Salt bridges: A:H.390, A:H.390 pi-Stacking: A:W.372 Halogen bonds: A:T.313

1 x KMP: 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)

KMP.5: 13 residues within 4Å: Chain A: A.37, H.40, L.106, M.145, F.146, H.165, T.167, L.175, T.313, A.413, E.414 Ligands: EDO.1, U2F.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.106, A:L.175 Hydrogen bonds: A:H.165 Water bridges: A:E.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maharjan, R. et al., Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-03-02

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

Related Entries With Identical Sequence