SMTL ID : 6m18.1

ACE2-B0AT1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

14 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.278, T.280, E.281 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.62, T.64, E.66, N.67, Q.349 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: K.35, N.99 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: Q.90, Q.110, N.112, H.204 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain B: N.441, I.445, W.603 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain B: H.426, S.429, S.554, N.555 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.429 NAG-NAG.7: 4 residues within 4Å: Chain B: N.168, N.699, S.701, D.702 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.168 NAG-NAG.8: 3 residues within 4Å: Chain C: N.278, T.280, E.281 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain D: N.62, T.64, E.66, N.67, Q.349 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 2 residues within 4Å: Chain D: K.35, N.99 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain D: Q.90, Q.110, N.112, H.204 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain D: N.441, I.445, W.603 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain D: H.426, S.429, S.554, N.555 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.429 NAG-NAG.14: 4 residues within 4Å: Chain D: N.168, N.699, S.701, D.702 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.168

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 2 residues within 4Å: Chain A: E.177, N.178 No protein-ligand interaction detected (PLIP) NAG.16: 5 residues within 4Å: Chain A: R.198, N.202, S.204, Q.214, N.496 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.198, A:N.496 NAG.17: 2 residues within 4Å: Chain A: G.373, N.374 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.374 NAG.18: 3 residues within 4Å: Chain A: Q.385, N.388, Y.395 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.385, A:Q.385 NAG.21: 1 residues within 4Å: Chain B: N.331 No protein-ligand interaction detected (PLIP) NAG.23: 2 residues within 4Å: Chain C: E.177, N.178 No protein-ligand interaction detected (PLIP) NAG.24: 5 residues within 4Å: Chain C: R.198, N.202, S.204, Q.214, N.496 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.198, C:N.496 NAG.25: 2 residues within 4Å: Chain C: G.373, N.374 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.374 NAG.26: 3 residues within 4Å: Chain C: Q.385, N.388, Y.395 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.385, C:Q.385 NAG.29: 1 residues within 4Å: Chain D: N.331 No protein-ligand interaction detected (PLIP)

4 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.19: 9 residues within 4Å: Chain A: S.226, Y.229, W.473, E.476, V.477, G.480, C.483, F.487 Chain B: I.774 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.229, A:Y.229, A:W.473, A:W.473, A:V.477, A:F.487 3PH.20: 10 residues within 4Å: Chain A: L.98, V.99, E.320, V.324, I.325, I.328, F.332, H.544, N.547, F.549 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.98, A:V.99, A:I.325, A:I.328, A:I.328, A:F.332, A:F.332, A:F.332, A:F.549 Hydrogen bonds: A:N.547 Salt bridges: A:H.544 3PH.27: 9 residues within 4Å: Chain C: S.226, Y.229, W.473, E.476, V.477, G.480, C.483, F.487 Chain D: I.774 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.229, C:Y.229, C:W.473, C:W.473, C:V.477, C:F.487 3PH.28: 10 residues within 4Å: Chain C: L.98, V.99, E.320, V.324, I.325, I.328, F.332, H.544, N.547, F.549 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.98, C:V.99, C:I.325, C:I.328, C:I.328, C:F.332, C:F.332, C:F.332, C:F.549 Hydrogen bonds: C:N.547 Salt bridges: C:H.544

2 x ZN: ZINC ION(Non-covalent)

ZN.22: 4 residues within 4Å: Chain B: H.383, E.384, H.387, E.411 No protein-ligand interaction detected (PLIP) ZN.30: 4 residues within 4Å: Chain D: H.383, E.384, H.387, E.411 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, R. et al., Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2. Science (2020)

Release Date

2020-03-11

Peptides

Sodium-dependent neutral amino acid transporter B(0)AT1: AC
Angiotensin-converting enzyme 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent neutral amino acid transporter B(0)AT1

Angiotensin-converting enzyme 2

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