SMTL ID : 6m91.1

Monophosphorylated pSer33 b-Catenin peptide, b-TrCP/Skp1, NRX-103094 ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x J97: 3-({4-[(2,6-dichlorophenyl)sulfanyl]-2-oxo-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl}amino)benzoic acid(Non-covalent)

J97.1: 16 residues within 4Å: Chain A: N.257, G.271, R.273, R.294, G.295, I.296, A.297, S.311, L.335, Y.351 Chain C: S.14, D.17, I.20, H.21, A.22 Ligands: CL.3 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:I.20, C:A.22 Halogen bonds: C:A.22 Hydrogen bonds: A:G.295, A:G.295, A:S.311 Salt bridges: A:R.273 pi-Cation interactions: A:R.294

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: Q.300, R.340, F.341, Q.389, F.390 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.300, A:F.390, A:F.390, A:F.390 Water bridges: A:Q.389 Salt bridges: A:R.340

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Ligands: J97.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simonetta, K.R. et al., Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction. Nat Commun (2019)

Release Date

2019-04-03

Peptides

F-box/WD repeat-containing protein 1A: A
S-phase kinase-associated protein 1: B
Catenin beta-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

F-box/WD repeat-containing protein 1A

S-phase kinase-associated protein 1

Catenin beta-1

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