SMTL ID : 6m93.1

Monophosphorylated pSer33 b-Catenin peptide, b-TrCP/Skp1, NRX-1933 ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x J8Y: 2-oxo-N-[3-(1H-tetrazol-5-yl)phenyl]-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide(Non-covalent)

J8Y.1: 12 residues within 4Å: Chain A: N.257, G.271, R.294, G.295, I.296, A.297, S.311, L.335 Chain C: L.16, I.20, H.21, S.22 7 PLIP interactions: 1 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:L.16, A:L.335 Hydrogen bonds: A:R.294, A:G.295, A:G.295, A:S.311 pi-Cation interactions: A:R.294

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: Q.300, R.340, F.341, Q.389, F.390 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.390, A:F.390, A:F.390 Salt bridges: A:R.340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simonetta, K.R. et al., Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction. Nat Commun (2019)

Release Date

2019-04-03

Peptides

F-box/WD repeat-containing protein 1A: A
S-phase kinase-associated protein 1: B
Catenin beta-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

F-box/WD repeat-containing protein 1A

S-phase kinase-associated protein 1

Catenin beta-1

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