SMTL ID : 6mdz.1 (1 other biounit)

Human Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

2 x IPH: PHENOL(Non-covalent)

IPH.1: 8 residues within 4Å: Chain A: L.650, I.651, Y.654, K.660, P.661, L.694, E.695, Y.698 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.650, A:Y.654, A:K.660, A:L.694, A:Y.698 Hydrogen bonds: A:K.660, A:E.695 IPH.2: 6 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.590, A:A.620, A:F.653 Hydrogen bonds: A:V.591

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheu-Gruttadauria, J. et al., Structural Basis for Target-Directed MicroRNA Degradation. Mol.Cell (2019)

Release Date

2019-08-07

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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