SMTL ID : 6mfr.2 (1 other biounit)

Human Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: R.280 No protein-ligand interaction detected (PLIP)

2 x IPH: PHENOL(Non-covalent)

IPH.2: 6 residues within 4Å: Chain A: L.650, Y.654, K.660, P.661, L.694, E.695 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.650, A:Y.654, A:K.660, A:K.660, A:L.694, A:E.695 IPH.3: 7 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653, F.659 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.590, A:V.591, A:A.620, A:F.653, A:F.659 Hydrogen bonds: A:F.587

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheu-Gruttadauria, J. et al., Structural Basis for Target-Directed MicroRNA Degradation. Mol.Cell (2019)

Release Date

2019-08-07

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein argonaute-2

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