SMTL ID : 6me5.1

XFEL crystal structure of human melatonin receptor MT1 in complex with agomelatine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x AWY: ~{N}-[2-(7-methoxynaphthalen-1-yl)ethyl]ethanamide(Non-covalent)

AWY.1: 12 residues within 4Å: Chain A: A.95, M.98, G.99, N.153, L.159, T.169, F.170, Q.172, V.182, V.183, L.432, N.433 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.98, A:L.159, A:F.170, A:V.182, A:V.183 Hydrogen bonds: A:N.153, A:Q.172

1 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 4 residues within 4Å: Chain A: Y.198, W.202, F.415, F.419 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.419, A:F.419, A:F.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stauch, B. et al., Structural basis of ligand recognition at the human MT1melatonin receptor. Nature (2019)

Release Date

2019-04-24

Peptides

chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase

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