SMTL ID : 6mep.1

Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC3437

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-dimer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.33, L.36, I.37, L.38 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: V.98, I.99, R.100, P.121, M.123, R.181 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: W.240, Y.250, P.251, L.268, K.269 Chain B: L.137 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: L.137 Chain B: W.240, Y.250, P.251, L.268, K.269 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: R.33, L.36, I.37, L.38 Ligand excluded by PLIP

2 x 9VS: cis-4-[(2-[(4-{[4-(1,3-dioxolan-2-yl)pyridin-2-yl]ethynyl}phenyl)amino]-5-{4-[(4-methylpiperazin-1-yl)methyl]phenyl}pyrimidin-4-yl)amino]cyclohexan-1-ol(Non-covalent)

9VS.4: 25 residues within 4Å: Chain A: K.40, L.42, G.43, V.50, A.66, K.68, M.90, I.99, L.101, V.118, L.120, P.121, F.122, M.123, K.124, Y.125, G.126, D.127, T.130, M.179, A.189, D.190, F.191, G.192, L.193 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.42, A:K.68, A:I.99, A:D.127, A:A.189, A:L.193 Hydrogen bonds: A:K.68, A:P.121, A:M.123, A:F.191 pi-Stacking: A:F.191 9VS.8: 28 residues within 4Å: Chain B: L.42, G.43, E.44, G.45, V.50, A.66, K.68, M.90, I.99, R.100, L.101, L.102, I.119, L.120, P.121, F.122, M.123, K.124, Y.125, G.126, D.127, Y.131, Y.134, M.179, A.189, D.190, F.191 Ligands: MG.7 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.42, B:V.50, B:I.99, B:I.99, B:L.120, B:L.120, B:A.189 Hydrogen bonds: B:P.121, B:M.123, B:D.190 pi-Stacking: B:F.122, B:F.191

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain B: N.177, D.190 Ligands: 9VS.8 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Da, C. et al., Data-Driven Construction of Antitumor Agents with Controlled Polypharmacology. J.Am.Chem.Soc. (2019)

Release Date

2019-09-11

Peptides

Tyrosine-protein kinase Mer: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase Mer

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