SMTL ID : 6mnq.1

Rhesus macaque anti-HIV V3 antibody DH727.2 with gp120 V3 ZAM18 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.14, Y.16 Ligands: EDO.2 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: F.15, Y.16 Ligands: EDO.1 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain C: K.45, Q.51, G.63, P.65, F.68 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.45, C:K.45, C:Q.51, C:G.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Q. et al., Difficult-to-neutralize global HIV-1 isolates are neutralized by antibodies targeting open envelope conformations. Nat Commun (2019)

Release Date

2019-07-24

Peptides

Envelope glycoprotein: A
Ab DH727.2 heavy chain Fab fragment: B
Ab DH727.2 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
H

C
L

Envelope glycoprotein

Ab DH727.2 heavy chain Fab fragment

Ab DH727.2 light chain

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