SMTL ID : 6mnr.1

Rhesus macaque anti-HIV V3 antibody DH753 with gp120 V3 ZAM18 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.6, R.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.6, A:S.6, A:S.6 Salt bridges: A:R.8 SO4.2: 5 residues within 4Å: Chain B: Q.180, S.181 Chain C: G.162, E.164, S.183 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.183, B:Q.180, B:S.181, B:S.181 Water bridges: C:E.164, C:S.183 SO4.3: 6 residues within 4Å: Chain C: E.84, R.106, T.108, Y.144, K.170, Y.176 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.144, C:Y.176 Salt bridges: C:R.106, C:K.170

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain C: S.60, R.62, Q.80, E.82 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.60, C:R.62, C:Q.80, C:E.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Q. et al., Difficult-to-neutralize global HIV-1 isolates are neutralized by antibodies targeting open envelope conformations. Nat Commun (2019)

Release Date

2019-07-24

Peptides

Envelope glycoprotein: A
Ab DH753 heavy chain Fab fragment: B
Ab DH753 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
H

C
L

Envelope glycoprotein

Ab DH753 heavy chain Fab fragment

Ab DH753 light chain

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