SMTL ID : 6ms1.1 (1 other biounit)

Crystal structure of the human Scribble PDZ1 domain bound to the PDZ-binding motif of APC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x GLY- SER- TYR- LEU- VAL- THR- SER- VAL: APC C-terminus peptide(Non-covalent)

GLY-SER-TYR-LEU-VAL-THR-SER-VAL.1: 18 residues within 4Å: Chain A: R.12, G.16, L.17, G.18, I.19, S.20, I.21, A.22, G.23, S.27, T.28, P.29, Y.30, S.40, H.72, V.76, L.79, R.80 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.17, A:I.19, A:A.22, A:H.72, A:V.76, A:L.79, A:R.80 Hydrogen bonds: A:L.17, A:G.18, A:I.19, A:I.19, A:I.19, A:S.20, A:I.21, A:I.21, A:G.23, A:T.28, A:T.28, A:R.80 Water bridges: A:G.26, A:R.80

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.11, R.12, Q.13, P.47, R.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.11, A:R.50 Water bridges: A:L.11 EDO.3: 11 residues within 4Å: Chain A: R.12, V.62, N.63, A.78, L.79, R.80, G.81, A.82, G.83, A.85, V.86 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:N.63, A:A.78, A:G.81, A:G.83 EDO.4: 4 residues within 4Å: Chain A: R.12, Q.13, T.14, T.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.14 EDO.5: 9 residues within 4Å: Chain A: E.3, K.31, F.38, G.56, D.57, K.58, W.91, R.92, E.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.31, A:K.58, A:E.93 Water bridges: A:G.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

How, J.Y. et al., Crystal structure of the human Scribble PDZ1 domain bound to the PDZ-binding motif of APC. FEBS Lett. (2019)

Release Date

2019-02-06

Peptides

Protein scribble homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein scribble homolog

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