SMTL ID : 6mu5.1

Bst DNA polymerase I TNA/DNA binary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.5, C.6, A.7 No protein-ligand interaction detected (PLIP) SO4.2: 1 residues within 4Å: Chain B: R.47 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.47 SO4.3: 3 residues within 4Å: Chain B: R.406, K.410 Ligands: SO4.4 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.386, B:K.410 Salt bridges: B:R.406, B:K.410 SO4.4: 2 residues within 4Å: Chain B: K.410 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.410 SO4.5: 3 residues within 4Å: Chain B: R.10, T.12, E.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.13 Water bridges: B:E.14 Salt bridges: B:R.10 SO4.6: 1 residues within 4Å: Chain B: R.523 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.523 SO4.7: 4 residues within 4Å: Chain B: A.17, D.18, E.44, H.45 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.16, B:D.18 Salt bridges: B:H.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, L.N. et al., Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase. Nucleic Acids Res. (2019)

Release Date

2019-06-05

Peptides

DNA polymerase I: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

DNA polymerase I

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