SMTL ID : 7k5q.1

Bst DNA polymerase I time-resolved structure, 8 min post dATP addition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain C: H.386, R.406, K.410 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.406, C:K.410 SO4.2: 5 residues within 4Å: Chain C: E.371, D.372, D.373, G.449, R.452 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:D.373, C:D.373, C:D.373, C:G.449, C:R.452 Water bridges: C:N.374, C:N.374 SO4.3: 2 residues within 4Å: Chain C: R.381, M.391 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.381, C:K.388, C:K.388, C:K.388 Salt bridges: C:R.381

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Covalent)

DTP.4: 8 residues within 4Å: Chain A: T.10 Chain B: T.5, A.6 Chain C: P.331, I.332, R.333, Y.418, H.533 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chim, N. et al., Following replicative DNA synthesis by time-resolved X-ray crystallography. Nat Commun (2021)

Release Date

2021-03-03

Peptides

DNA polymerase I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase I

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