SMTL ID : 6mvr.1

Structure of a bacterial ALDH16

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.735, S.736, H.754 6 PLIP interactions: 6 interactions with chain A Water bridges: A:G.463, A:R.735, A:S.736, A:H.754 Salt bridges: A:R.735, A:H.754 SO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.3: 7 residues within 4Å: Chain A: G.264, G.265, K.266, R.301, E.388, I.389, Y.414 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.265, A:K.266, A:I.389, A:Y.414 Salt bridges: A:K.266, A:R.301 SO4.5: 3 residues within 4Å: Chain B: R.735, S.736, H.754 6 PLIP interactions: 6 interactions with chain B Water bridges: B:G.463, B:R.735, B:S.736, B:H.754 Salt bridges: B:R.735, B:H.754 SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.7: 7 residues within 4Å: Chain B: G.264, G.265, K.266, R.301, E.388, I.389, Y.414 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.265, B:K.266, B:I.389, B:Y.414 Salt bridges: B:K.266, B:R.301

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: N.117, K.119, E.123, W.165, N.166, F.167, W.289 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.117, A:N.117, A:K.119, A:E.123 Water bridges: A:Q.292 GOL.8: 7 residues within 4Å: Chain B: N.117, K.119, E.123, W.165, N.166, F.167, W.289 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.117, B:N.117, B:K.119, B:E.123 Water bridges: B:Q.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L.K. et al., Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer. J. Mol. Biol. (2019)

Release Date

2018-12-26

Peptides

Aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aldehyde dehydrogenase

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