SMTL ID : 6mvt.1

Structure of a bacterial ALDH16 complexed with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 23 residues within 4Å: Chain A: V.162, I.163, W.165, K.189, P.190, A.191, E.192, W.193, D.221, G.222, G.225, E.226, F.238, T.239, G.240, S.241, V.244, R.247, I.248, Q.294, D.342, Q.343, R.346 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.193, A:D.342 Hydrogen bonds: A:I.163, A:K.189, A:E.192, A:E.226, A:S.241, A:R.247, A:Q.294, A:D.342, A:R.346 Water bridges: A:D.349 NAI.5: 23 residues within 4Å: Chain B: V.162, I.163, W.165, K.189, P.190, A.191, E.192, W.193, D.221, G.222, G.225, E.226, F.238, T.239, G.240, S.241, V.244, R.247, I.248, Q.294, D.342, Q.343, R.346 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.193, B:D.342 Hydrogen bonds: B:I.163, B:K.189, B:E.192, B:E.226, B:S.241, B:R.247, B:Q.294, B:D.342, B:R.346 Water bridges: B:D.349

6 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: V.457, R.458, G.461, L.733 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.458 Water bridges: A:R.458, A:R.735 NA.3: 4 residues within 4Å: Chain A: T.50, V.51, D.116, W.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.50, A:V.51, A:D.116 NA.4: 3 residues within 4Å: Chain A: V.620, L.622, G.624 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.622, A:G.624 Water bridges: A:V.620 NA.6: 4 residues within 4Å: Chain B: V.457, R.458, G.461, L.733 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.461 Water bridges: B:R.458, B:R.735 NA.7: 4 residues within 4Å: Chain B: T.50, V.51, D.116, W.193 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.50, B:V.51, B:D.116 NA.8: 3 residues within 4Å: Chain B: V.620, L.622, G.624 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.620, B:G.624 Water bridges: B:V.620

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L.K. et al., Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer. J. Mol. Biol. (2019)

Release Date

2018-12-26

Peptides

Aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aldehyde dehydrogenase

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