SMTL ID : 6mx4.3 (2 other biounits)

CryoEM structure of chimeric Eastern Equine Encephalitis Virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

4 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.1: 5 residues within 4Å: Chain A: Q.32, N.134, T.136, W.142, S.144 No protein-ligand interaction detected (PLIP) NAG-NAG-NAG.2: 5 residues within 4Å: Chain D: Q.32, N.134, T.136, W.142, S.144 No protein-ligand interaction detected (PLIP) NAG-NAG-NAG.3: 5 residues within 4Å: Chain G: Q.32, N.134, T.136, W.142, S.144 No protein-ligand interaction detected (PLIP) NAG-NAG-NAG.4: 5 residues within 4Å: Chain J: Q.32, N.134, T.136, W.142, S.144 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain B: V.314, N.315 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.315 NAG.6: 2 residues within 4Å: Chain E: V.314, N.315 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.315 NAG.7: 2 residues within 4Å: Chain H: V.314, N.315 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:N.315 NAG.8: 2 residues within 4Å: Chain K: V.314, N.315 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasan, S.S. et al., Cryo-EM Structures of Eastern Equine Encephalitis Virus Reveal Mechanisms of Virus Disassembly and Antibody Neutralization. Cell Rep (2018)

Release Date

2018-12-19

Peptides

E1: ADGJ
E2: BEHK
Capsid: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

E1

E2

Capsid

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