SMTL ID : 6odf.1 (3 other biounits)

EEEV glycoproteins bound with heparan sulfate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

6 x U9A- U97: 2-O-sulfo-beta-L-galactopyranuronic acid-(1-4)-[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid(Non-covalent)

U9A-U97.1: 3 residues within 4Å: Chain B: N.80, H.82, H.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.80, B:H.114, B:N.80 Salt bridges: B:H.114, B:H.82 U9A-U97.2: 10 residues within 4Å: Chain B: L.2, D.3, T.4, L.62, S.93, H.94, H.155, K.156, R.157, A.158 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.93, B:S.93, B:H.94, B:R.157, B:L.2, B:D.3, B:R.157, B:A.158 Salt bridges: B:R.157 U9A-U97.3: 8 residues within 4Å: Chain D: N.80, H.82, H.114 Chain F: H.82, H.114 Chain H: H.82, H.114, R.119 8 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F, 4 interactions with chain H Hydrogen bonds: D:N.80, D:H.114, D:N.80 Salt bridges: D:H.114, F:H.82, D:H.82, H:H.82, H:H.82, H:H.114, H:H.114, F:H.82, F:H.114 U9A-U97.4: 10 residues within 4Å: Chain D: L.2, D.3, T.4, L.62, S.93, H.94, H.155, K.156, R.157, A.158 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.93, D:S.93, D:H.94, D:R.157, D:D.3, D:T.4, D:R.157, D:A.158 Salt bridges: D:R.157 U9A-U97.5: 10 residues within 4Å: Chain F: L.2, D.3, T.4, L.62, S.93, H.94, H.155, K.156, R.157, A.158 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:S.93, F:S.93, F:H.94, F:R.157, F:L.2, F:D.3, F:R.157, F:A.158 Salt bridges: F:R.157 U9A-U97.6: 10 residues within 4Å: Chain H: L.2, D.3, T.4, L.62, S.93, H.94, H.155, K.156, R.157, A.158 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:S.93, H:S.93, H:H.94, H:R.157, H:L.2, H:D.3, H:T.4, H:R.157, H:A.158 Salt bridges: H:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.L. et al., Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-04-01

Peptides

E1: ACEG
E2: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

E1

E2

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