SMTL ID : 6n6n.1 (1 other biounit)

FtsY-NG high-resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 17 residues within 4Å: Chain A: N.108, G.109, V.110, G.111, K.112, T.113, T.114, K.118, R.139, T.252, K.253, D.255, G.278, V.279, G.280, E.281 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.108, A:G.109, A:V.110, A:G.111, A:K.112, A:T.113, A:T.113, A:T.114, A:R.139, A:K.253, A:K.253, A:G.280, A:E.281 Water bridges: A:T.113, A:T.113, A:K.118, A:K.118, A:R.139, A:R.139, A:E.281 Salt bridges: A:D.255

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.113, R.139 Ligands: GCP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.113, H2O.1, H2O.2, H2O.6 MG.3: 5 residues within 4Å: Chain A: L.23, E.36, L.37, E.39, Q.40 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.36, H2O.4 MG.4: 2 residues within 4Å: Chain A: D.32, E.35 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.35

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 1 residues within 4Å: Chain A: R.301 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faoro, C. et al., Structural insights into the G-loop dynamics of E. coli FtsY NG domain. J.Struct.Biol. (2019)

Release Date

2019-10-09

Peptides

Signal recognition particle receptor FtsY: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Signal recognition particle receptor FtsY

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