- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- monomer
- Ligands
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 6 residues within 4Å:- Chain A: L.119, Q.122, F.123, Q.126, Y.276, P.288
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:P.288
- Hydrogen bonds: A:Q.126, A:Y.276
- Water bridges: A:L.92, A:Y.276
ACT.4: 7 residues within 4Å:- Chain A: G.117, K.118, R.121, W.149, R.152, N.153, I.283
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:R.121, A:W.149
- Water bridges: A:N.153
- Salt bridges: A:R.152
ACT.5: 4 residues within 4Å:- Chain A: G.1, K.290, D.293
- Ligands: ACT.6
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.290
ACT.6: 3 residues within 4Å:- Chain A: G.1
- Ligands: ACT.5, NH4.22
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.1
ACT.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ACT.8: 5 residues within 4Å:- Chain A: A.3, R.4, K.6, R.7
- Ligands: NH4.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.3, A:R.7
- Salt bridges: A:K.6
- 14 x NH4: AMMONIUM ION(Non-functional Binders)
NH4.9: 2 residues within 4Å:- Chain A: K.178, A.179
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.179
NH4.10: 4 residues within 4Å:- Chain A: D.31, F.34, E.38, I.55
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.31
NH4.11: 4 residues within 4Å:- Chain A: R.7, L.10
- Ligands: ACT.8, NH4.18
No protein-ligand interaction detected (PLIP)NH4.12: 5 residues within 4Å:- Chain A: G.47, V.48, E.49, T.50, Q.269
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.48, A:E.49, A:E.49
- Water bridges: A:T.50
NH4.13: 9 residues within 4Å:- Chain A: N.108, K.112, T.113, D.136, R.139, A.142, D.188, T.189
- Ligands: GDP.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.136, A:R.139, A:D.188
NH4.14: 7 residues within 4Å:- Chain A: T.137, F.138, A.164, D.165, S.166, A.167, E.202
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.137, A:D.165, A:S.166
NH4.15: 5 residues within 4Å:- Chain A: K.211, E.216, A.217, P.218, V.221
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.211, A:E.216
NH4.16: 4 residues within 4Å:- Chain A: H.198, L.199, E.201, E.202
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.198
NH4.17: 5 residues within 4Å:- Chain A: V.107, L.193, N.232, S.235, Q.236
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.232, A:Q.236
NH4.18: 1 residues within 4Å:- Ligands: NH4.11
No protein-ligand interaction detected (PLIP)NH4.19: 5 residues within 4Å:- Chain A: D.45, T.229, G.230, Q.231, N.232
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.45, A:Q.231
NH4.20: 3 residues within 4Å:- Chain A: F.171, V.209, K.212
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.212
NH4.21: 2 residues within 4Å:- Chain A: E.39, I.43
No protein-ligand interaction detected (PLIP)NH4.22: 4 residues within 4Å:- Chain A: G.1, F.2, A.3
- Ligands: ACT.6
1 PLIP interactions:1 interactions with chain A- Water bridges: A:F.2
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Faoro, C. et al., Structural insights into the G-loop dynamics of E. coli FtsY NG domain. J.Struct.Biol. (2019)
- Release Date
- 2019-10-23
- Peptides
- Signal recognition particle receptor FtsY: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- monomer
- Ligands
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 14 x NH4: AMMONIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Faoro, C. et al., Structural insights into the G-loop dynamics of E. coli FtsY NG domain. J.Struct.Biol. (2019)
- Release Date
- 2019-10-23
- Peptides
- Signal recognition particle receptor FtsY: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B