SMTL ID : 6n8t.1

Hsp104DWB closed conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: P.180, V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.388 Chain F: G.324, R.328 8 PLIP interactions: 1 interactions with chain F, 7 interactions with chain A Hydrogen bonds: F:R.328, A:I.182, A:I.182, A:G.210, A:G.212, A:K.213, A:T.214, A:E.218 ATP.2: 17 residues within 4Å: Chain A: V.575, V.576, Q.578, S.611, G.612, S.613, G.614, K.615, T.616, E.617, I.775, I.778, R.782, Y.814, M.818, G.819, A.820 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:V.576, A:V.576, A:Q.578, A:G.612, A:G.614, A:K.615, A:T.616, A:R.782, A:A.820 ATP.3: 19 residues within 4Å: Chain A: R.328, R.329 Chain B: P.180, V.181, I.182, R.184, E.208, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, D.385, L.388 15 PLIP interactions: 1 interactions with chain A, 14 interactions with chain B Salt bridges: A:R.329, B:K.213, B:K.213 Hydrogen bonds: B:I.182, B:I.182, B:G.210, B:I.211, B:G.212, B:K.213, B:T.214, B:T.214, B:T.214, B:A.215, B:D.385, B:D.385 ATP.4: 15 residues within 4Å: Chain B: V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, D.681, L.770, I.778, A.820, R.821, N.824 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.576, B:V.576, B:G.612, B:G.614, B:T.616, B:T.616, B:E.617, B:E.617, B:N.824, B:N.824 ATP.5: 16 residues within 4Å: Chain C: D.179, P.180, V.181, I.182, R.184, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, L.388 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:D.179, C:I.182, C:I.182, C:E.208, C:G.210, C:I.211, C:G.212, C:K.213, C:T.214, C:T.214, C:T.214, C:A.215 Salt bridges: C:K.213, C:K.213 ATP.6: 16 residues within 4Å: Chain B: R.760 Chain C: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, N.723, L.770, I.778, A.820, N.824 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:V.576, C:V.576, C:G.612, C:S.613, C:G.614, C:K.615, C:T.616, C:T.616, C:T.616, C:E.617, C:N.723, C:N.824 Salt bridges: C:K.615, C:K.615, B:R.760 ATP.7: 19 residues within 4Å: Chain C: R.329 Chain D: D.179, P.180, V.181, I.182, R.184, E.208, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, D.385, L.388 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.179, D:I.182, D:I.182, D:G.210, D:I.211, D:G.212, D:K.213, D:T.214, D:T.214, D:A.215, C:R.329 Salt bridges: D:K.213, D:K.213 ATP.8: 20 residues within 4Å: Chain C: R.760 Chain D: V.575, V.576, Q.578, L.610, S.611, G.612, S.613, G.614, K.615, T.616, E.617, R.635, T.721, L.770, I.778, R.782, A.820, R.821, N.824 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:V.576, D:G.612, D:S.613, D:G.614, D:K.615, D:T.616, D:T.616, D:E.617, D:R.635, D:R.782, D:N.824, C:R.760 Salt bridges: D:K.615 ATP.9: 15 residues within 4Å: Chain D: R.329 Chain E: P.180, V.181, I.182, R.184, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, D.385, L.388 12 PLIP interactions: 11 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:I.182, E:I.182, E:G.210, E:I.211, E:G.212, E:K.213, E:T.214, E:T.214, E:A.215 Salt bridges: E:K.213, E:K.213, D:R.329 ATP.10: 20 residues within 4Å: Chain E: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, R.635, D.681, T.721, N.723, L.770, I.778, R.782, A.820, R.821, N.824 17 PLIP interactions: 17 interactions with chain E Hydrogen bonds: E:V.576, E:V.576, E:G.612, E:G.614, E:K.615, E:T.616, E:T.616, E:E.617, E:R.635, E:T.721, E:N.723, E:N.723, E:N.824 Salt bridges: E:K.615, E:K.615, E:R.821, E:R.821 ATP.11: 14 residues within 4Å: Chain F: V.181, I.182, R.184, G.210, I.211, G.212, K.213, T.214, A.215, D.279, I.281, I.346, L.350, D.385 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:I.182, F:I.182, F:G.210, F:I.211, F:G.212, F:K.213, F:T.214, F:T.214, F:T.214, F:A.215, F:D.279, F:D.279 Salt bridges: F:K.213 ATP.12: 16 residues within 4Å: Chain E: E.756 Chain F: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, L.770, I.778, R.782, A.820, R.821 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:V.576, F:V.576, F:S.611, F:G.612, F:S.613, F:G.614, F:K.615, F:T.616, F:E.617, F:E.617, F:R.782, F:R.782 Salt bridges: F:K.615, F:K.615, F:R.821, F:R.821

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S. et al., Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation. Cell Rep (2019)

Release Date

2019-01-02

Peptides

Heat shock protein 104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Heat shock protein 104

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