SMTL ID : 6nax.1 (1 other biounit)

Olfactomedin domain of mouse myocilin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.100

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: E.113, Y.138, H.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.113 Water bridges: A:Y.138, A:H.141

1 x K: POTASSIUM ION(Non-covalent)

K.5: 4 residues within 4Å: Chain A: S.97, W.146, G.148, Y.149 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patterson-Orazem, A.C. et al., Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains from Humans and Mice. Biochemistry (2019)

Release Date

2019-03-13

Peptides

Myocilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myocilin

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