SMTL ID : 6nax.2 (1 other biounit)

Olfactomedin domain of mouse myocilin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.153, N.201, A.202, I.250, D.251 Ligands: NA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:A.202, A:I.250, A:D.251, H2O.5

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: G.99, A.100, V.101, D.153, L.154, D.251 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.251

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: T.192, N.193, Y.226, S.233 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193, A:N.193 Water bridges: A:N.193, A:S.233 GOL.4: 4 residues within 4Å: Chain A: Y.40, T.63, V.64, Y.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.64, A:Y.149 Water bridges: A:Y.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patterson-Orazem, A.C. et al., Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains from Humans and Mice. Biochemistry (2019)

Release Date

2019-03-13

Peptides

Myocilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Myocilin

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