SMTL ID : 6nbl.2 (1 other biounit)

Cytochrome P450cam-putidaredoxin complex bound to camphor and cyanide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: Q.109, F.112, R.113, L.245, L.246, G.250, T.253, V.254, L.295, V.296, R.300, Q.323, T.350, F.351, G.352, H.356, L.357, C.358, L.359, G.360, A.364 Ligands: CYN.2 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:L.245, A:L.295, A:V.296, A:V.296, A:Q.323, A:T.350, A:F.351, A:F.351, A:L.359, A:L.359, A:L.359 Hydrogen bonds: A:Q.109, A:H.353 Water bridges: A:R.300, A:Q.323 Salt bridges: A:R.113, A:R.300, A:H.356 Metal complexes: A:C.358

1 x CYN: CYANIDE ION(Non-covalent)

CYN.2: 4 residues within 4Å: Chain A: G.249, T.253 Ligands: HEM.1, CAM.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.253

1 x CAM: CAMPHOR(Non-covalent)

CAM.3: 4 residues within 4Å: Chain A: E.95, G.249, V.397 Ligands: CYN.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.397 Hydrogen bonds: A:D.298

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: E.199, D.203 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.199, A:D.203, A:D.203, H2O.4

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.5: 10 residues within 4Å: Chain B: M.30, G.43, C.45, G.47, A.49, S.50, C.51, A.52, C.54, C.92 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.45, B:C.51, B:C.54, B:C.92

1 x 1N0: 1,1'-hexane-1,6-diyldipyrrolidine-2,5-dione(Covalent)

1N0.6: 3 residues within 4Å: Chain A: C.345 Chain B: C.25, P.98 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Follmer, A.H. et al., Ligand and Redox Partner Binding Generates a New Conformational State in Cytochrome P450cam (CYP101A1). J. Am. Chem. Soc. (2019)

Release Date

2019-03-06

Peptides

Camphor 5-monooxygenase: A
Putidaredoxin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Camphor 5-monooxygenase

Putidaredoxin

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