SMTL ID : 6nbq.1

T.elongatus NDH (data-set 1)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: R.69 Chain C: A.51, C.52, C.53, G.88, T.89, A.116, C.117, G.147, C.148, P.149 2 PLIP interactions: 2 interactions with chain C, Metal complexes: C:C.117, C:C.148 SF4.2: 12 residues within 4Å: Chain D: I.56, C.73, P.74, L.77, P.78, I.98, C.103, I.104, C.106, A.107, N.108, C.109 0 PLIP interactions: SF4.3: 13 residues within 4Å: Chain D: F.58, C.63, I.64, A.65, C.66, E.67, V.68, C.69, C.113, P.114, T.115, C.117, L.118 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laughlin, T.G. et al., Structure of the complex I-like molecule NDH of oxygenic photosynthesis. Nature (2019)

Release Date

2019-02-27

Peptides

NAD(P)H-quinone oxidoreductase subunit H: A
NAD(P)H-quinone oxidoreductase subunit J: B
NAD(P)H-quinone oxidoreductase subunit K: C
NAD(P)H-quinone oxidoreductase subunit I: D
NAD(P)H-quinone oxidoreductase subunit N: E
NAD(P)H-quinone oxidoreductase subunit L: F
NAD(P)H-quinone oxidoreductase subunit M: G
NAD(P)H-quinone oxidoreductase subunit O: H
Tlr0636 protein: I
NdhA: J
NAD(P)H-quinone oxidoreductase subunit 3: K
NAD(P)H-quinone oxidoreductase subunit 4L: L
Proton-translocating NADH-quinone dehydrogenase subunit P NdhP: M
NADH dehydrogenase subunit 5: N
NAD(P)H-quinone oxidoreductase chain 4 1: O
NAD(P)H-quinone oxidoreductase subunit 2: P
NADH-quinone oxidoreductase subunit J: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
J

C
K

D
I

E
N

F
L

G
M

H
O

I
S

J
A

K
C

L
E

M
P

N
F

O
D

P
B

Q
G

Membrane

We predict this structure to be a membrane protein.
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NAD(P)H-quinone oxidoreductase subunit H

NAD(P)H-quinone oxidoreductase subunit J

NAD(P)H-quinone oxidoreductase subunit K

NAD(P)H-quinone oxidoreductase subunit I

NAD(P)H-quinone oxidoreductase subunit N

NAD(P)H-quinone oxidoreductase subunit L

NAD(P)H-quinone oxidoreductase subunit M

NAD(P)H-quinone oxidoreductase subunit O

Tlr0636 protein

NdhA

NAD(P)H-quinone oxidoreductase subunit 3

NAD(P)H-quinone oxidoreductase subunit 4L

Proton-translocating NADH-quinone dehydrogenase subunit P NdhP

NADH dehydrogenase subunit 5

NAD(P)H-quinone oxidoreductase chain 4 1

NAD(P)H-quinone oxidoreductase subunit 2

NADH-quinone oxidoreductase subunit J

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